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Species belonging to selected taxon:

Brassica napus



ABOUT THIS RECORD

ID: MNEST000242
species: Brassica napus
miRNA family: MIRf419
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCCACAGCTTTSTTGAGCTTT

miRNA*
AGTTCAAGAAAGCTGTGGAAA

mismatches: 2
bulges: 0

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pre-miRNA
AACCCTGAATTGTCATGTTTTCCCACAGCTTTSTTGAGCTTTTTTTTTSTAGAGTGTTAAATGTTAGAGATTTTTAGTTATTTAATTTCGCTSTAAAATA
AGGGAAATGAAAAAGAAAGTTCAAGAAAGCTGTGGAAAAATATAACCAGGATCTTC


dot-bracket secondary structure
...((((....((.(((((((.((((((((((.((((((((((((((..(.(((((.((((.(((...))).))))..))))).(((((.((.((...))
.)))))))).)))))))))))))).)))))))))).))))))).))))))......



SIMILARITIES
miRBase bna-MIR396a: 4e-44

PMRD bna-miR396a: 4e-44

microPC miR396: 0.0000003
UniProt no hits

RFAM MIR396: 0.0000000000003
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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